https://nova.newcastle.edu.au/vital/access/ /manager/Index ${session.getAttribute("locale")} 5 Signal transduction in diffuse intrinsic pontine glioma https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:46767 HIST1H3B/C and H3F3A), altering the epigenetic landscape of primitive oligodendrocyte or astrocyte precursor cells of the pontine region of the brainstem. Lysine‐to‐methionine point mutations at amino acid 27 (H3K27M) co‐occur with alterations in signaling genes, including the receptor tyrosine kinases (PDGFR/KIT/VEGFR/MET/EGFR), activin A receptor (ACVR1), intracellular kinases (PI3K/AKT/mTOR), cyclin‐dependent kinases (CDKs1/4/6), transcriptional regulators (MYCN), and tumor suppressors (PTEN/TP53). This cooperation drives gene expression signatures that inhibit cellular differentiation (ID1/2, Hedgehog) and promotes malignant transformation. Unique to DIPG, is the frequency of co‐occurring sets of genomic insults. However, mapping of the oncogenic signaling pathways activated in response to recurring mutations is unresolved. Herein, known oncogenic signal pathways activated in response to recurring somatic mutations and gene amplifications in DIPG are reviewed. Additionally, an important role for high‐resolution quantitative proteomics/phosphoproteomics in the characterization of signaling cascades are highlighted. These regulate the cell cycle, epigenetics and anti‐apoptotic processes, information critical for the development of improved treatment strategies for DIPG.]]> Wed 30 Nov 2022 11:45:04 AEDT ]]> Altered expression of histone and synaptic plasticity associated genes in the hippocampus of streptozotocin-induced diabetic mice https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:19659 Wed 27 Jul 2022 13:52:25 AEST ]]> Parity is associated with long-term differences in DNA methylation at genes related to neural plasticity in multiple sclerosis https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:53345 Wed 22 Nov 2023 10:19:25 AEDT ]]> Epigenome-wide association studies: current knowledge, strategies and recommendations https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:48596 Wed 22 Mar 2023 08:46:40 AEDT ]]> Detailed DNA methylation characterisation of phyllodes tumours identifies a signature of malignancy and distinguishes phyllodes from metaplastic breast carcinoma https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:54801 Wed 13 Mar 2024 11:41:50 AEDT ]]> Can the gap in Aboriginal outcomes be explained by DOHaD. https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:42381 Wed 13 Mar 2024 09:40:58 AEDT ]]> DNA methylation in development https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:13745 Wed 11 Apr 2018 16:02:31 AEST ]]> Epigenetic regulation of airway inflammation in asthma https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:16473 Wed 11 Apr 2018 15:33:24 AEST ]]> The periconceptional environment and cardiovascular disease: does in vitro embryo culture and transfer influence cardiovascular development and health? https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:27600 Wed 11 Apr 2018 14:31:48 AEST ]]> Mechanisms of epigenetic regulation of gene expression in colorectal cancer cells https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:11905 Wed 11 Apr 2018 10:56:58 AEST ]]> Folate and vitamin D: the role of nutritional status and nutrigenetics in predicting levels of extracellular microRNA and circulating DNA methylation status https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:23271 Wed 11 Apr 2018 10:32:06 AEST ]]> The 2HA line of Medicago truncatula has characteristics of an epigenetic mutant that is weakly ethylene sensitive https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:18017 Wed 11 Apr 2018 09:35:25 AEST ]]> Molecular characterisation of oncogenic signalling networks to develop treatment strategies for diffuse intrinsic pontine glioma https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:54081 Wed 06 Mar 2024 14:35:48 AEDT ]]> Derivation of poly-methylomic profile scores for schizophrenia https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:39125 p-value thresholds by summing methylation beta-values weighted by individual-CpG effect sizes from the meta-analysis of a previously published schizophrenia EWAS (comprising three separate cohorts with 675 [353 SZ and 322 HC] discovery cohort participants, 847 [414 SZ and 433 HC] replication cohort participants, and 96 monozygotic twin-pairs discordant for SZ). All SZ PMPSs were elevated in SZ participants relative to HCs, with the score calculated at a p-value threshold of 1 x 10−5 accounting for the greatest amount of variance. All PMPSs were elevated in SZ relative to BD and none of the PMPSs were increased in BD, or in a combined cohort of BD and SZ cases, relative to HCs. PMPSs were also not associated with positive or negative symptom severity. That this SZ-derived PMPSs was elevated in SZ, but not BD, suggests that epigenome-wide methylation patterns may represent distinct pathophysiology that is yet to be elucidated.]]> Wed 01 May 2024 12:58:28 AEST ]]> Maternal nutrition and cognition https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:33632 Tue 27 Nov 2018 16:39:25 AEDT ]]> Obesity and male infertility https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:54524 Tue 27 Feb 2024 19:29:54 AEDT ]]> Genome-wide base-resolution mapping of DNA methylation in single cells using single-cell bisulfite sequencing (scBS-seq) https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:32623 Tue 26 Jun 2018 11:28:33 AEST ]]> Increased progesterone receptor A expression in labouring human myometrium is associated with decreased promoter occupancy by the histone demethylase JARID1A https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:21455 PR gene and (ii) identified the histone-modifying enzymes that target the H3K4me3 mark at the PR promoters in term and preterm human myometrial tissues obtained before and after labour onset. Bisulphite sequencing showed that despite overall low levels of PR CpG island methylation, there was a significant decrease in methylated CpGs with labour in both preterm (P < 0.05) and term (P < 0.01) groups downstream of the PR-B transcription start site. This methylation change was not associated with altered PR-B expression, but may contribute to the increase in PR-A expression with labour. Chromatin immunoprecipitation revealed that the histone methyltransferase, SET and MYND domain-containing protein 3 (SMYD3), bound to the PR gene at significantly higher levels at the PR-A promoter compared with the PR-B promoter (P < 0.010), with no labour-associated changes observed. The H3K4 demethylase, Jumonji AT-rich interactive domain 1A (JARID1A), also bound to the PR-A, but not to the PR-B promoter prior to term labour, and decreased significantly at the onset of labour (P = 0.014), providing a mechanism for the previously reported increase in H3K4me3 level and PR-A expression with labour. Our studies suggest that epigenetic changes mediated by JARID1A, SMYD3 and DNA methylation may be responsible, at least in part, for the functional progesterone withdrawal that precipitates human labour.]]> Tue 24 Apr 2018 11:46:49 AEST ]]> DNA Methylation Signatures of Multiple Sclerosis Occur Independently of Known Genetic Risk and Are Primarily Attributed to B Cells and Monocytes https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:54378 Tue 20 Feb 2024 20:24:50 AEDT ]]> The Jemalong 2HA line used for Medicago truncatula transformation: hormonology and epigenetics https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:44611 Tue 18 Oct 2022 08:44:53 AEDT ]]> Dietary and supplemental intake of vitamins C and E is associated with altered DNA methylation in an epigenome-wide association study meta-analysis https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:52573 Tue 17 Oct 2023 15:48:00 AEDT ]]> The Role of Genetics in Preterm Birth https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:53822 Tue 16 Jan 2024 15:19:57 AEDT ]]> CD4+ T-cell DNA methylation changes during pregnancy significantly correlate with disease-associated methylation changes in autoimmune diseases https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:47078 Tue 13 Dec 2022 16:28:39 AEDT ]]> An HNRNPK-specific DNA methylation signature makes sense of missense variants and expands the phenotypic spectrum of Au-Kline syndrome https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:51636 Tue 12 Sep 2023 20:14:53 AEST ]]> Differential DNA methylation of steatosis and non-alcoholic fatty liver disease in adolescence https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:50245 Tue 11 Jul 2023 12:10:27 AEST ]]> Evidence for type-specific DNA methylation patterns in epilepsy: a discordant monozygotic twin approach https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:45586 Tue 08 Nov 2022 15:02:59 AEDT ]]> Maternal smoking during pregnancy induces persistent epigenetic changes into adolescence, independent of postnatal smoke exposure and is associated with cardiometabolic risk https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:45857 p level: 1.06 × 10-7), that were associated with maternal smoking during pregnancy, including associated genes AHRR (cancer development), FTO (obesity), CNTNAP2 (developmental processes), CYP1A1 (detoxification), MYO1G (cell signalling) and FRMD4A (nicotine dependence). A sensitivity analysis showed a dose dependent relationship between maternal smoking and offspring methylation. These results changed little following adjustment for paternal, passive or offspring smoking and there were no CpGs identified that associated with these variables. Two of the 23 identified CpGs (cg00253568 (FTO) and cg00213123 (CYP1A1)) were associated with either TG (males and females), diastolic blood pressure (females only) or HDL-C (males only), after Bonferroni correction. Discussion: This study demonstrates a critical timing of cigarette smoke exposure over the life-course for establishing persistent changes in DNA methylation into adolescence in a dose dependent manner. There were significant associations between offspring CpG methylation and adolescent cardiovascular risk factors, namely TG, HDL-C and diastolic blood pressure. Future studies on current smoking habits and DNA methylation should consider the importance of maternal smoking during pregnancy and explore how the persistent DNA methylation effects of in utero smoke exposure increase cardiometabolic risk.]]> Tue 08 Nov 2022 08:25:41 AEDT ]]> Vitomics: A novel paradigm for examining the role of vitamins in human biology https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:53494 Thu 30 Nov 2023 15:44:11 AEDT ]]> Exposure to Stress and Air Pollution from Bushfires during Pregnancy: Could Epigenetic Changes Explain Effects on the Offspring? https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:39670 Thu 28 Jul 2022 08:10:20 AEST ]]> Conceiving complexity: Biological mechanisms underpinning the lasting effect of pregnancy on multiple sclerosis outcomes https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:51627 Thu 23 Nov 2023 14:26:15 AEDT ]]> Genome-wide analysis of DNA methylation in single cells using a post-bisulfite adapter tagging approach https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:45991 Thu 10 Nov 2022 10:14:22 AEDT ]]> Epigenetic modifying enzyme expression in asthmatic airway epithelial cells and fibroblasts https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:30829 Thu 09 Dec 2021 11:04:14 AEDT ]]> Mouse germ cell development: from specification to sex determination https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:9702 Sat 24 Mar 2018 08:34:38 AEDT ]]> Folic acid fortification: a double-edged sword https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:7268 Sat 24 Mar 2018 08:33:50 AEDT ]]> Paternal obesity, interventions, and mechanistic pathways to impaired health in offspring https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:20202 Sat 24 Mar 2018 08:06:49 AEDT ]]> Catechol-O-methyltransferase (COMT) genotype moderates the effects of childhood trauma on cognition and symptoms in schizophrenia https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:21387 Catechol-O-methyltransferase (COMT) Val158Met polymorphism, a common genetic variant known to affect cognition and prefrontal dopamine levels. Participants were 429 schizophrenia/schizoaffective cases from the Australian Schizophrenia Research Bank (ASRB). Cognitive performance was assessed using the Repeatable Battery for Assessment of Neuropsychological Status (RBANS), Controlled Oral Word Association Test (COWAT), Letter Number Sequencing (LNS) test, and the Wechsler Test of Adult Reading (WTAR). Hierarchical regression was used to test the main effects and additive interaction effects of genotype and childhood trauma in the domains of physical abuse, emotional abuse, and emotional neglect, on cognition and symptom profiles of clinical cases. Consistent with previous findings, COMT Val homozygotes performed worse on cognitive measures in the absence of childhood adversity. In addition, a significant interaction between COMT genotype and physical abuse was associated with better executive function in Val homozygotes, relative to those of the same genotype with no history of abuse. Finally, the severity of positive symptoms was greater in Met carriers who had experienced physical abuse, and the severity of negative symptoms in Met carriers was greater in the presence of emotional neglect. These results suggest that the possible epigenetic modulation of the expression of the COMT Val158Met polymorphism and consequent effects on cognition and symptoms in schizophrenia, with worse outcomes associated with adverse childhood experiences in Met carriers.]]> Sat 24 Mar 2018 08:05:04 AEDT ]]> Diet and our genetic legacy in the recent anthropocene: a Darwinian perspective to nutritional health https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:21346 Sat 24 Mar 2018 07:51:24 AEDT ]]> Methylation differences at the HLA-DRB1 locus in CD4+ T-Cells are associated with multiple sclerosis https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:29000 Sat 24 Mar 2018 07:41:17 AEDT ]]> In utero programming of allergic susceptibility https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:29322 Sat 24 Mar 2018 07:34:20 AEDT ]]> Defining the mechanisms by which the reactive oxygen species by-product, 4-hydroxynonenal, affects human sperm cell function https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:27253 Sat 24 Mar 2018 07:29:09 AEDT ]]> Epigenetic variations and psychosocial parameters in relapsing-remitting multiple sclerosis https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:22021 Mon 24 Sep 2018 13:40:15 AEST ]]> Early-life nutrition and child behavioural and cognitive outcomes https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:33803 Mon 23 Sep 2019 13:59:39 AEST ]]> Epigenetic regulation of progesterone receptor isoforms in human parturition https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:32020 Mon 23 Sep 2019 12:12:16 AEST ]]> Single-cell epigenomics in cancer: Charting a course to clinical impact https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:42366 Mon 22 Aug 2022 14:08:36 AEST ]]> Histone deacetylase inhibitors: providing new insights and therapeutic avenues for unlocking human birth https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:49910 Mon 19 Jun 2023 11:07:36 AEST ]]> Crosstalk between DNA methylation and hypoxia in acute myeloid leukaemia https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:52306 Mon 09 Oct 2023 10:16:43 AEDT ]]> Epigenetic mechanisms underlying the development and progression of chronic obstructive pulmonary disease https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:38008 Fri 23 Jul 2021 15:13:02 AEST ]]> Vitamin-related phenotypic adaptation to exposomal factors: The folate-vitamin D-exposome triad https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:44510 Fri 14 Oct 2022 09:11:45 AEDT ]]> Heart Failure in Breast Cancer Survivors: Focus on Early Detection and Novel Biomarkers https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:48913 Fri 14 Apr 2023 18:21:40 AEST ]]> Whole-blood methylation signatures are associated with and accurately classify multiple sclerosis disease severity https://nova.newcastle.edu.au/vital/access/ /manager/Repository/uon:52991 Fri 03 Nov 2023 16:05:35 AEDT ]]>